RnoEX6049874 @ rn6
Exon Skipping
Gene
ENSRNOG00000020951 | Slc4a1
Description
solute carrier family 4 member 1 [Source:RGD Symbol;Acc:3710]
Coordinates
chr10:90296141-90299006:-
Coord C1 exon
chr10:90298837-90299006
Coord A exon
chr10:90298579-90298752
Coord C2 exon
chr10:90296141-90297714
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGACCTCGGCTTCCCCACAGGTG
3' ss Score
10.91
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GACTGTCCATTCTCATGGAACCCATCCTGTCCCGCATCCCCCTGGCCGTACTGTTTGGCATCTTCCTGTACATGGGGATCACATCCCTCAGTGGCATCCAGCTCTTTGACCGCATCTTGCTCCTGTTCAAGCCACCCAAGTACCACCCAGATGTGCCCTTTGTCAAGAGG
Seq A exon
GTGAAGACCTGGCGTATGCACCTCTTCACGGGCATCCAGATCATCTGCCTGGCTGTGCTGTGGGTGGTGAAGTCCACGCCAGCCTCGCTGGCCCTGCCCTTTGTCCTCATCCTCACCGTGCCCCTGCGTCGTCTCCTCCTGCCGCTCATCTTCAGAGAGCTAGAACTCCAGTGT
Seq C2 exon
CTGGATGGTGATGATGCCAAAGTGACCTTTGACGAGGCGGAAGGGCTGGATGAGTATGACGAAGTGCCCATGCCTGTGTGAGGGGCAGGCCCAGGCCCCCAACCACTCCACTTTCCCACCCTCCTGGGAAGACCATTCATGGGCATGTCATGGCTGTGGGTGGGGAAGGAGAGGTTGTCTAGGAAACTCTCTACATAAGGTATACGGGATTTTCTGGCTGGAGACGACCAGAAGTTATATCAGGGAATTGGGGTCACAGTCTCTTGCGACTGTACGGGTCCCATGTGGCATAGTTATAAATAGCAAAGGGGAGACACTTTTCAAGTTCCTGCTGGCTGTGTGGCCTTAAGTAAGTCCCTTGACCTCTCTGGCCTCTGCCCCCTACTCTATAGAATGTATGCATTGGTAATAATACCCATGTTACCGGCTGCTGAGGACCAAGAGCAAATGTCTAAGAACTATTACAGTCTTCATTGTTCTCAGAGCCTGCCCAGATCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020951-'26-30,'26-29,27-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.6=100)
A:
PF0095516=HCO3_cotransp=PD(3.9=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCTCTTTGACCGCAT
R:
AGACAACCTCTCCTTCCCCAC
Band lengths:
256-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]