DreEX6016144 @ danRer10
Exon Skipping
Gene
ENSDARG00000012881 | slc4a1a
Description
solute carrier family 4 (anion exchanger), member 1a (Diego blood group) [Source:ZFIN;Acc:ZDB-GENE-010525-1]
Coordinates
chr3:19916121-19919196:-
Coord C1 exon
chr3:19919027-19919196
Coord A exon
chr3:19916950-19917123
Coord C2 exon
chr3:19916121-19916809
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATCTATCTGTTTCTTTGTAGGTG
3' ss Score
11.11
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTGTCTCAATTCTCATGGAGCCCATTCTGAAGATGATTCCTATGACTGCTCTGTTCGGGATCTTCCTCTACATGGGTATCACTTCACTGAGTGGCATCCAGCTTTGGGACCGCATGCTCCTGCTCATTACGCCGAAAAAGCATCATCCGGCTGTTCCATATGTCACCCGT
Seq A exon
GTGCCAACTATGCGTATGCACTTGTACACTTTGATCCAAGTGATGTGTTTGGCGTTGCTGTGGGTGGTAAAATCGAGTAATTTCTCACTCGCCCTTCCATTCGTTCTGATCCTCACGATCCCTCTGAGAATGTTCATGACCGGTCACGTCTTCACTGTTATGGAAATGAAATGT
Seq C2 exon
CTGGATGCTGATGACGCAAACGTGAAATTTGATGATGAAGACGACTAAAAAAACAATCTCTAGATTCTTGATTTCTGATTCCAAACCACTATGAATTCATCTCACTGTGTGCATTACATGAGAATAATTTTGCTTATATTTTTTTAACTGTTGTACATTCAAATCCCTTAGTTTAACAGGTCAGAAATGTTGAAGAATGTGATCAATGCACACCTAAAGTTCATAAACTGTTCATATACATTCCGTAGTTGTTTATCCGAATAGTATGTTTTCTTACTTTTGCATAGAACATTGTGCTTAAGCTTTTGATTTTATTTTATTTTTGTGTGTGTGTTTGTGCCTTTTAAGATTTGGGATTAAAACATCATCCTGTTATTTATTTATTTAAAGTATTCAGGGTTTAAAGCAGGAAACTTCACGTTGGAGTGAGGCATGTCAACTATGCACCAGCTCGATTGTACCCCCGTCCTGTTTCCACAGGTGATGCCAATGCAAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012881-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.4=100)
A:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCATCATCCGGCTGTTCC
R:
AGGTGTGCATTGATCACATTCT
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]