GgaEX0016873 @ galGal3
Exon Skipping
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23588355-23590260:-
Coord C1 exon
chr7:23590091-23590260
Coord A exon
chr7:23589775-23589948
Coord C2 exon
chr7:23588355-23589039
Length
174 bp
Sequences
Splice sites
3' ss Seq
GCCTGGATTTACCTCCCTAGGTA
3' ss Score
9.37
5' ss Seq
GCCGTAAGC
5' ss Score
5.13
Exon sequences
Seq C1 exon
GCCTGTCCATTGTGATGGGGAACATGCTGCGGCAGATCCCGCTGGCTGTGCTCTTTGGCATCTTCCTCTACATGGGGGTTACGTCTCTCACGGGCATCCAGCTCTACGAGCGACTGCTCCTGATCTTCATGCCATCCAAGCACCACCCCGACCACATCTATGTTGTTAAG
Seq A exon
GTAAAGACATGGAGGATGAATCTCTTCACCTGCATTCAACTGGCCTGCATTGTGCTGCTCTGGGTGGTGAAATCTACAGTGGCATCTCTGGCCTTTCCCTTCGTTCTGATCATGACGGTGCCATTGCGACGCTTCGTGCTGCCCCGCTTCTTCCACGACAGGGAGCTCAAAGCC
Seq C2 exon
TTGGACTCGGAGGATGCAGAGCCAAACTTTGATGAGGATGGCCGGGACGAGTACAATGAGCTGCACATGCCTGTGTGAACTGGGGCCTGCCTTCCCTGCACTTGGGACAGGCTGCTCACACCTGCTCGTTCCCTCAAGGACTAGCGGGAGACTTGCCACAAGTCAAGCAATCTTGCCTGGACCAACGAATGGCTGTTCCATAGCTCCGCAGGAGGCAGCCCCTGCTCCTGCTGCCCCATCACTCACTCAGCAGAGGCTGCTCGTCTCTCTCCTCTCGGACCTGGTGGGCTGAGAGGTGCCTCTCACATCCCAAAGCTGTGCGGGTCCAGAGCGCCTGTGGGTCAGGGGTCTGCCCTGTCCCTGCTGGAGGCAGCCTGTGTTCAATCTCCAGGTGGTGAAGGGGAGCCATGCCAGCTGGTCCCACTGTGTCCCACTCCATTTCCATGAAGCTTGGGTGTCGCACCACGATGCGCTATTGGGCAGTCACAGGAACTGGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-'26-31,'26-30,27-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.0=100)
A:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGGGGTTACGTCTCTCA
R:
AGTCTCCCGCTAGTCCTTGAG
Band lengths:
254-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]