DreEX0073055 @ danRer10
Exon Skipping
Gene
ENSDARG00000052330 | slc4a2b
Description
solute carrier family 4 (anion exchanger), member 2b [Source:ZFIN;Acc:ZDB-GENE-030429-14]
Coordinates
chr24:33386709-33390568:-
Coord C1 exon
chr24:33390399-33390568
Coord A exon
chr24:33389488-33389661
Coord C2 exon
chr24:33386709-33387570
Length
174 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGGTTTGGATCTCAGGTG
3' ss Score
7.44
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GTCTGTCAATAGTTATCGGTGATCTGCTCCGGCAAATCCCCATCGCTGTGCTGTTCGGCATCTTCCTCTACATGGGTGTGATGTCACTGAACGGGATCCAGATGACTGAACGGATCCTGCTTCTGCTGATGCCTCCAAAATACCACCCTGACCACACATACGTGCGCAAG
Seq A exon
GTGCGGACGCTGCGGATGCATCTGTTCACAGCTATTCAGGTGGTTTGTCTGGCTGTTCTCTGGGCTGTCATGTCCACGGTGGCGTCGCTGGCTTTCCCCTTTGTTCTCATCATGACTGTCCCCGTCAAGATGTTTCTTCTACCACGCATCTTTAGCAATCGTGAAATGCAGTGT
Seq C2 exon
TTGGACGCTGATGACGCAGAGCCCACTTTTGACGAGAAGGAAGGACAGGATGAATACACAGAGATGCACATGCCAGTCTGAGGCCGCACATCTTCCTATCAATCACACTATTGGCCAACAGGATGGCTGCTTTTCAAAAAACCAAATCTTTATTGAGCCTGACGTGCGGTGGAGGTGAGAAAGAGCTACATGTACATGGACCTGACCTCCACTCCACAATCCCACAGACTCATTGCATTGGTATTAGAGCGTTTGAGCTGCTATCAACACCGTTTAGCCTTAACCTAGCGTATTCGTCATCCGTGAGAACAACTGAATGTACCATATTGGGGTTAACTGGACGTTCTAAACACCATTCAGGGCCCATGCAATATTATATATGTTCTTTTTAAGCAAACGTTTATGATCGAGAAAGACTGCCAAGGTCGATTTCATCGTAATACTGTGGTTTTAATAGTTTTAATGGCTCATTGTTTAAACTTTCGAACGTCATACAGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052330-'25-28,'25-27,28-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.489
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCACTGAACGGGATCCAGA
R:
CCGCACGTCAGGCTCAATAAA
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]