RnoEX0082810 @ rn6
Exon Skipping
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7264683-7265504:-
Coord C1 exon
chr4:7265335-7265504
Coord A exon
chr4:7265007-7265180
Coord C2 exon
chr4:7264683-7264915
Length
174 bp
Sequences
Splice sites
3' ss Seq
CACCTCATCTCTGCCTCCAGGTT
3' ss Score
9.65
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GACTCTCCATGGTCATTGGGGACCTACTGCGGCAGATCCCCCTGGCTGTGCTCTTTGGCATTTTCTTATACATGGGAGTTACTTCCCTTAATGGGATCCAATTCTACGAGCGGTTGCACCTGCTACTCATGCCGCCCAAACACCACCCAGATGTTACCTATGTCAAGAAG
Seq A exon
GTTCGGACCATGCGGATGCACCTGTTCACTGCCTTGCAGCTGCTCTGTCTGGCCCTGCTTTGGGCGGTCATGTCCACAGCTGCTTCCCTGGCCTTCCCCTTCATCCTCATCCTCACAGTGCCTTTGCGCATGGTGGTACTTACCCGGATCTTCACTGAGCGAGAAATGAAATGT
Seq C2 exon
CTGGATGCTAATGAGGCAGAGCCAGTGTTTGATGAGTGTGAAGGTGTGGACGAGTACAACGAGATGCCCATGCCTGTGTAGCTGCTGTCCAGAGGCATAGCAGAGGGACTAAGGGGCAGGGGCTGGGGGGCTGGGGAGCTGGGGCTCCCCTCCTCCTGTCCCTCCTCATTTTTATTTAAGTGAATAATTTAAAGCCCCCTTGTCCCCACCCTGCAGTAAAGTGCTTCAACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-'41-30,'41-28,43-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.4=100)
A:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGTGCTCTTTGGCATTT
R:
GCCCCTTAGTCCCTCTGCTAT
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]