MmuEX0043397 @ mm9
Exon Skipping
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:23945899-23946768:+
Coord C1 exon
chr5:23945899-23946068
Coord A exon
chr5:23946222-23946393
Coord C2 exon
chr5:23946490-23946768
Length
172 bp
Sequences
Splice sites
3' ss Seq
CACCTCATCTCTGCCTGCAGGTT
3' ss Score
10.13
5' ss Seq
AATGTGTAA
5' ss Score
-10.41
Exon sequences
Seq C1 exon
GCCTCTCCATGGTCATTGGGGACCTCCTGCGGCAGATCCCCCTGGCTGTGCTCTTTGGCATTTTCTTGTACATGGGAGTCACCTCCCTCAATGGGATCCAGTTCTACGAGCGGCTGCACCTGCTGCTCATGCCGCCCAAACACCACCCAGATGTCACCTATGTCAAAAAG
Seq A exon
GTTCGGACCATGCGGATGCACCTGTTCACTGCCTTGCAGTTGCTCTGCCTGGCCCTGCTTTGGGCAGTCATGTCCACAGCCGCTTCCCTGGCCTTCCCCTTCATCCTCATCCTCACAGTGCCTTTGCGCATGGTGGTACTTACCCGAATCTTCACTGAGCGAGAAATGAAAT
Seq C2 exon
CTGGATGCTAATGAGGCAGAGCCAGTGTTTGACGAGTGTGAAGGTGTGGATGAGTACAACGAGATGCCCATGCCTGTGTAGCTGCTGTCCAGAGGCACAGCAGAGGGACTGAGGGGCAGGGGGCCCATGCCTGTGTAACTGCTGTCCAGAGGCACAGCAGAGGGACTAAGGGGTGAGGGCTGGGGGTCCTCTCCTCCTGCCCCTCCTCATTTTTATTTAAGTGAATAATTTAAAGCCCCCTTCTCCCTATCCTGCAGTAAAGTGCTTCAACCCCAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTCCATGGTCATTGGGGA
R:
CTACACAGGCATGGGCATCTC
Band lengths:
250-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: