DreEX6027738 @ danRer10
Exon Skipping
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32408679-32417470:-
Coord C1 exon
chr2:32417301-32417470
Coord A exon
chr2:32413540-32413713
Coord C2 exon
chr2:32408679-32411445
Length
174 bp
Sequences
Splice sites
3' ss Seq
GTCCTGTGTCTTTTTTTCAGGTG
3' ss Score
12.49
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GCCTCTCAATTGTGATTGGAGATTTGCTGCGGCAGGTTCCTATCGCTGTGTTGTTTGGTATTTTCCTCTATATGGGAGTGATGTCTCTCAATGGCATCCAGCTAACAGAACGCATGATGCTGCTATTCATGCCACCGAAATACCACCCCGACCACACATACGTCCGGAAG
Seq A exon
GTGCGAACCCTCCGAATGCATCTGTTCACGTGTCTTCAGCTGGTGTGTCTGGCTGTTTTGTGGATTGTAATGTCAACCGCAGCTTCGCTGGCCTTCCCGTTTGTCCTGGTCCTCACTGTGCCATTCAGAAGGTTCCTGCTGTCCCGGATATTTTCTCATCGCGAGATTCAATGT
Seq C2 exon
CTCGATGCAGACGACGCAGAGCCCACGTTAGATGACAAAGACGGTCAAGATGAATATACAGAGATGCAAATGCCAGTATGACCTCATTCCTGGACTGATCAAACTTTCTTTTCAGGTCCAAACTTTACTGCCTGTCTTTCTTTTCTTTAATCAAATTTTTTGTGTCATTTTTGTTTCCCCCGTTGTGTTTCTGCTTAACTGATAGAAACAGTATATTTATAGCTGTGTAAAAGTGTTCAATAGTCGCTCGCTGTCATTTGTTTCTCTCCGTCTTTCTCACTTGTGCTGTCGATCTGTTTATTTATCAGAGTCCAAATGTTCTATGTTGTGTGTTTTGTGTAGGGTTAAATGGATAAATTAAATGATGATCTCACATTAGCTCAAAATGATACAGGAAGCACTTTAAGATCAGCTTTAAAACAAATGAAGCCTTTTCTACTGCTTGTTAACGTTCTCCTAAAAAATGAACAACTGTACAGAAGAAAATGAATGCAAACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.308
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.9=100)
A:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTATTCATGCCACCGAA
R:
TAAGCAGAAACACAACGGGGG
Band lengths:
249-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]