MmuEX6090093 @ mm9
Exon Skipping
Gene
ENSMUSG00000006574 | Slc4a1
Description
solute carrier family 4 (anion exchanger), member 1 [Source:MGI Symbol;Acc:MGI:109393]
Coordinates
chr11:102210138-102212840:-
Coord C1 exon
chr11:102212671-102212840
Coord A exon
chr11:102212416-102212589
Coord C2 exon
chr11:102210138-102211681
Length
174 bp
Sequences
Splice sites
3' ss Seq
TGACCCTGGCTTCCCCACAGGTG
3' ss Score
11.41
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GACTGTCCATCCTCATGGAACCTATCCTGTCCCGCATCCCCCTGGCTGTGCTCTTCGGCATCTTCCTGTACATGGGAGTCACATCCCTCAGTGGCATCCAGCTCTTTGACCGCATCTTGCTCCTGTTCAAGCCACCCAAGTACCACCCGGATGTGCCCTTTGTCAAGAGG
Seq A exon
GTGAAGACCTGGCGCATGCACCTCTTCACGGGCATCCAGATCATCTGCCTGGCTGTGCTGTGGGTGGTGAAGTCCACTCCTGCCTCGCTGGCCTTGCCCTTCGTCCTCATCCTCACAGTGCCTCTCCGTCGTCTCATCCTCCCGCTCATCTTCAGAGAGCTGGAACTCCAGTGT
Seq C2 exon
CTGGACGGTGATGATGCCAAAGTGACCTTTGACGAGGAGAATGGCCTGGATGAATATGACGAAGTGCCCATGCCTGTGTGAGCGGCAGGCCCAGGCCCCAACCACTCCACTTTCCCACCCTCCCAGGAAGACCACTCATGGGCGTGTTATGGCTGTGGGTGGGGAAGGAGGGGTGTTCTAGGAAACCCTCTATCTAAGGTACACTGGATTTTCTGGCTGGAGACGACCGGAAGCTATATCAGGGAATTGGGGTCACAGTCTCTTGCAACTGTATGGGCCCCAGGCTGGAAAAGTTAGATCTGTGTCTCTTCTCTTCATGGCATAGTTATAAATAGCAAAGGGGAGAGACGGAGGACACTTTTCATGTTCCTGCTGGCTGTGTGGCCTTAGGTAAGTCCCTTGACCTCTCTGGCCTCTGCTTCCTACTCTATAAAATGTATGCATTGGTAAGAGTACCTATGTTACCATATGGCAGCTGAGGACCAAGAGCAAATGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006574-'29-27,'29-25,32-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(19.6=100)
A:
PF0095516=HCO3_cotransp=PD(3.8=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCTCTTTGACCGCAT
R:
CTAGAACACCCCTCCTTCCCC
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: