HsaEX6011299 @ hg38
Exon Skipping
Gene
ENSG00000164889 | SLC4A2
Description
solute carrier family 4 member 2 [Source:HGNC Symbol;Acc:HGNC:11028]
Coordinates
chr7:151075606-151076526:+
Coord C1 exon
chr7:151075606-151075775
Coord A exon
chr7:151076013-151076186
Coord C2 exon
chr7:151076287-151076526
Length
174 bp
Sequences
Splice sites
3' ss Seq
CACCTGTCTCCGCCCCCCAGGTC
3' ss Score
10.84
5' ss Seq
TGTGTAAGC
5' ss Score
4.52
Exon sequences
Seq C1 exon
GCCTCTCCATAGTTATCGGGGATCTGCTCCGGCAGATCCCCCTGGCCGTGCTCTTTGGAATTTTCCTGTACATGGGAGTCACCTCCCTTAACGGGATCCAGTTCTATGAGCGGCTGCATCTGCTGCTCATGCCGCCCAAACACCACCCAGATGTCACTTACGTCAAGAAG
Seq A exon
GTCCGGACCCTCCGTATGCACCTGTTCACGGCCCTGCAGCTGCTCTGCCTGGCCCTGCTCTGGGCCGTCATGTCCACAGCTGCCTCCCTGGCCTTCCCCTTCATCCTCATCCTCACAGTGCCGCTCCGCATGGTGGTGCTCACCCGTATCTTCACCGACCGAGAGATGAAATGT
Seq C2 exon
CTGGATGCTAACGAGGCAGAGCCGGTGTTTGATGAGCGGGAGGGTGTGGACGAGTACAATGAGATGCCCATGCCTGTGTAGCCGCCACCGAGGGACAGCCGAGGGACCGATGGACGAGGGGACAGGCTGGTGGGATGGGGTTCCCCCTCCCATGCCCCTCCCTCCTTTTTATTTAAGTGAATAATTTAAAGTCTTCTCCTCCCCCACTGCCCCTGCAGTAAAGTGCTTTGGCCCCCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164889-'49-57,'49-54,51-57
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(2.2=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAACACCACCCAGATGTC
R:
CAGTGGGGGAGGAGAAGACTT
Band lengths:
245-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains