HsaEX0059803 @ hg38
Exon Skipping
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219640430-219641980:+
Coord C1 exon
chr2:219640430-219640599
Coord A exon
chr2:219640789-219640962
Coord C2 exon
chr2:219641651-219641980
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCCACTGGCTGCTCCCCTAGGTG
3' ss Score
9.04
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GCCTGTCCATCGTCATGGGGGCTGTGCTGCGTCGGATCCCATTGGCTGTGCTCTTTGGGATCTTCCTGTACATGGGGGTCACGTCCCTGTCTGGTATCCAGCTGTCCCAGCGTTTGTTGCTCATCCTCATGCCGGCAAAACACCATCCTGAGCAGCCCTATGTGACCAAG
Seq A exon
GTGAAGACGTGGCGGATGCATCTGTTCACCTGCATCCAGCTGGGCTGCATCGCACTGCTCTGGGTGGTCAAGTCCACGGCGGCCTCACTCGCCTTTCCCTTCCTGCTGCTGCTCACGGTGCCTCTGAGGCATTGCCTTCTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCG
Seq C2 exon
CTGGACTCGGAAGATGCTGAACCAAACTTCGATGAGGATGGCCAGGATGAGTACAATGAGCTGCACATGCCAGTGTGACCCTTGAAGACAGTGCCCCTCAGAGACCCCAAGACCTTAGGGATTGACACCTGGGCCTCAGGCAGAGCCCAGCCCTGGGCTGGGGGGCTCCTCAGGACCCAGAGATGTGCCTGGAACCACTCCTGATGCCATGGCTAGAGTGGCCCCCCTGACTTCTGCCCGGGGTGTTGACCTCGCCTCACCTTTCACAGACCAGACCGGCACAGGCTTTGAGCTCATTATAACCACACTCCTTGTCTCGTGTCTGCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.440
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.5=100)
A:
PF0095516=HCO3_cotransp=PD(2.3=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACACCATCCTGAGCAGCC
R:
CCATGGCATCAGGAGTGGTTC
Band lengths:
246-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development