BtaEX0033332 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108284933-108286884:+
Coord C1 exon
chr2:108284933-108285102
Coord A exon
chr2:108285257-108285430
Coord C2 exon
chr2:108286560-108286884
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCCGACACCTGTTCCCCAGGTG
3' ss Score
7.78
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GCCTGTCCATCGTCATGGGGGCTGTGCTACGTCGGATCCCACTGGCCGTGCTCTTTGGGATTTTCCTGTACATGGGGGTCACATCGCTGTCTGGTATCCAGCTGTCCCAGCGTCTATTGCTCATCCTCATGCCGGCAAAACACCATCCTGAACAGCCCTACGTGACCAAG
Seq A exon
GTGAAGACCTGGCGGATGCACCTCTTTACGTGCATTCAGCTGGGCTGCATCGCACTGCTCTGGGTGGTCAAGTCCACGGCGGCCTCACTCGCCTTTCCCTTCGTGCTGCTGCTCACAGTGCCTCTGAGGCGTTGCCTTCTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCG
Seq C2 exon
CTGGACTCTGAAGATGCTGAACCAAACTTTGATGAAGATGGCCAGGACGAGTACAACGAACTTCATATGCCCGTGTGATCCTCCACCACGGCGCCGCTGGGAGACCCTGACACCTTAGTGATCAACACCTGGGCCCCAGTCAGAGCCCAACCCCAGGGCCAGCTGGCTGCTCATGACCCAGAGACGTGCCTGGAACCACTACCGTTGCCTCGACCAGAAGGACCCCCTGACTCTACCCTTGGCGCTGACCTCGTCTCACCCAGGTCCTTTCACAGACCAGACCGGCACAGGCTTTGAGCTCATTATAACCACACTCCTTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.400
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.9=100)
A:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAGCCCTACGTGACCAAG
R:
GGTAGAGTCAGGGGGTCCTTC
Band lengths:
258-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development