RnoEX0082820 @ rn6
Exon Skipping
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82753412-82755153:+
Coord C1 exon
chr9:82753412-82753581
Coord A exon
chr9:82753769-82753942
Coord C2 exon
chr9:82754883-82755153
Length
174 bp
Sequences
Splice sites
3' ss Seq
AGACTGAGCCTGTACCCCAGGTG
3' ss Score
2.09
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTCTGTCTATCGTCATGGGAGCTGTGCTGCGCAGGATCCCGTTGGCCGTGCTCTTTGGGATTTTCCTGTACATGGGAGTCACATCACTGTCTGGTATCCAGTTGTCCCAGCGTCTGCTGCTCATTTTCATGCCAGCCAAGCATCACCCCGAGCAGCCCTACGTGACCAAG
Seq A exon
GTGAAGACATGGAGGATGCACCTGTTCACCTTCATCCAGCTGGGCTGCATCGCGCTCCTCTGGGTGGTCAAGTCAACGGTGGCCTCACTGGCCTTTCCCTTCCTGCTCTTGCTCACGGTGCCTCTGAGGCGTTGCCTTTTGCCCCGGCTCTTCCAGGACAGGGAGCTGCAGGCG
Seq C2 exon
CTGGACTCTGAAGACGCAGAGCCAAACTTTGATGAGGATGGTCAGGATGAGTACAATGAGCTCCACATGCCTGTGTGACCCTCAAGATGGTGGCCCTCCGAGACCCCACCTTGGTGACTCACCTCAGGACCCAGGGATGTGCCTGGAGTCACTGCCCATGCCAGGACAGTGGCCCCTTGACTTTCACAGCCCAGACGGCACCGGCTTTGAAGTCATTATAACACACTCCTTGTCTTGTGTCTGCCTCATTTTCTTGGTGCCACCAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138-'40-44,'40-43,41-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.7=100)
A:
PF0095516=HCO3_cotransp=PD(3.7=19.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATCGTCATGGGAGCTGTGC
R:
CATCTTGAGGGTCACACAGGC
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]