BtaEX6089364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008442 | NSF
Description
N-ethylmaleimide-sensitive factor [Source:HGNC Symbol;Acc:HGNC:8016]
Coordinates
chr19:46197528-46207970:-
Coord C1 exon
chr19:46207871-46207970
Coord A exon
chr19:46205261-46205300
Coord C2 exon
chr19:46197528-46197694
Length
40 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTTTTGTTTTACAGCGA
3' ss Score
11.61
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GCACGTGATTGTGAGGACCTCCCCCAACCACAGGTACACATTTACACTGAGGACACACCCATCTGTGGTTCCAGGGAGCATTGCATTCAGCTTACCTCAG
Seq A exon
CGAAAATGGGCTGGACTTTCTATTGGACAAGAAATAGAAG
Seq C2 exon
TGTCCTTATATACCTTTGACAAAGCCAAGCAGTGTATTGGCACGATGACCATCGAGATTGATTTCCTGCAGAAAAAAAGTATCGACTCCAACCCGTATGATACTGACAAGATGGCCGCAGAATTTATTCAGCAGTTCAACAACCAGGCATTCTCAGTGGGTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008442-'5-5,'5-3,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.043 C2=0.019
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
PF0235913=CDC48_N=FE(15.9=100)
C2:
PF0235913=CDC48_N=PD(7.3=10.7),PF0293312=CDC48_2=PU(30.4=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTGATTGTGAGGACCTC
R:
TGCCAATACACTGCTTGGCTT
Band lengths:
142-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]