RnoEX0061145 @ rn6
Exon Skipping
Gene
ENSRNOG00000003905 | Nsf
Description
N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:RGD Symbol;Acc:621594]
Coordinates
chr10:91972839-91984585:-
Coord C1 exon
chr10:91984486-91984585
Coord A exon
chr10:91981869-91981908
Coord C2 exon
chr10:91972839-91973005
Length
40 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCATTTATTTTATAGCGA
3' ss Score
8.79
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCATGTGATGGTGAGGACGTCCCCCAACCACAAGTACATATTTACGCTGCGGACCCATCCGTCCGTGGTTCCCGGATGCATCGCGTTCAGCTTACCCCAG
Seq A exon
CGAAAATGGGCTGGACTTTCTATTGGGCAGGACATAGAAG
Seq C2 exon
TCGCCTTGTATTCGTTTGACAAAGCCAAGCAGTGCATCGGCACAATGACCATCGAGATCGACTTCCTGCAGAAAAAGAACATCGACTCCAACCCTTACGACACCGACAAGATGGCTGCCGAGTTCATCCAGCAGTTCAACAACCAGGCCTTCTCAGTGGGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003905-'7-7,'7-4,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
PF0235913=CDC48_N=FE(15.9=100)
C2:
PF0235913=CDC48_N=PD(7.3=10.7),PF0293312=CDC48_2=PU(30.4=42.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGCATCGCGTTCAGCTTA
R:
TCTTGTCGGTGTCGTAAGGGT
Band lengths:
138-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]