GgaEX1040491 @ galGal3
Exon Skipping
Gene
ENSGALG00000001055 | E1C646_CHICK
Description
NA
Coordinates
chr27:1159301-1165040:-
Coord C1 exon
chr27:1164941-1165040
Coord A exon
chr27:1163019-1163058
Coord C2 exon
chr27:1159301-1159467
Length
40 bp
Sequences
Splice sites
3' ss Seq
GTTCTGTCTTATTTTTACAGAGA
3' ss Score
8.84
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
ACACGTTGTGGTGAAGACTTCTCCCAATCACAAATACATCTTCACACTGAGAACACATCCCTCTGTTGTTCCTGGCAACATCGCCTTCAGCTTACCCCAG
Seq A exon
AGAAAATGGGCTGGACTTTCCATAGGACAAGAGATAGACG
Seq C2 exon
TTTCCCTGTACACTTTCGACAAGTCTAAGCAGTGTATTGCCACGATGACGATTGAGATAGACTTTCTGCAGAAGAAGAACATTGACTCCAACCCATACGACACAGACAAGATGGCTGCTGAGTTCATCCAGCAGTTCAACAGCCAGGCCTTCTCTGTAGGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001055-'5-5,'5-3,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0235913=CDC48_N=FE(40.2=100)
A:
PF0235913=CDC48_N=FE(15.9=100)
C2:
PF0235913=CDC48_N=PD(7.3=10.7),PF0293312=CDC48_2=PU(33.3=42.9)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCGCCTTCAGCTTACCC
R:
CAGCAGCCATCTTGTCTGTGT
Band lengths:
144-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]