BtaEX6089436 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009458 | METTL2
Description
Bos taurus methyltransferase like 2B (METTL2B), mRNA. [Source:RefSeq mRNA;Acc:NM_001075246]
Coordinates
chr19:47516289-47520232:+
Coord C1 exon
chr19:47516289-47516349
Coord A exon
chr19:47518159-47518298
Coord C2 exon
chr19:47520126-47520232
Length
140 bp
Sequences
Splice sites
3' ss Seq
TCTCTTCCATCTGTCTGCAGACA
3' ss Score
11.58
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TGACCCAAGCCTCTTTGTGTACTGTTGTGATTTTTCTTCCACAGCTGTAGAACTGGTCCAG
Seq A exon
ACAAATTCGGCATATGACCCTTCTCGGTGTTTTGCCTTTGTTCATGATCTATGTGATGAAGATAAGAGTTACCCAATGCCTGAGAATAGTCTTGATGTCATCATCCTTATATTTGTTCTCTCAGCAATCGTTCCAGACAA
Seq C2 exon
GATGCAGAATGCTATCAACAGGCTGAGCAGGCTTCTGAAGCCCGGGGGGATAATGCTTCTGCGAGATTATGGCCGCTATGACATGGCTCAGCTTCGGTTTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009458-'8-8,'8-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(10.6=100)
A:
PF134891=Methyltransf_23=FE(24.5=100)
C2:
PF134891=Methyltransf_23=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAAGCCTCTTTGTGTAC
R:
TAAACCGAAGCTGAGCCATGT
Band lengths:
162-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]