GgaEX1035984 @ galGal4
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
Methyltransferase-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5ZHP8]
Coordinates
chr27:2339264-2342175:+
Coord C1 exon
chr27:2339264-2339324
Coord A exon
chr27:2340159-2340298
Coord C2 exon
chr27:2342069-2342175
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCCCTTAAATACAGAGC
3' ss Score
5.93
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TGACCCAGGCCTTTTTGTTTATTGCTGTGACTTTTCTACTACAGCTGTGGATCTTGTCCAG
Seq A exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
Seq C2 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'13-10,'13-9,15-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(10.5=100)
A:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(30.3=57.4)
C2:
PF134891=Methyltransf_23=FE(18.8=100),PF118993=DUF3419=FE(40.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGGCCTTTTTGTTTATTGC
R:
CTTGAACCGAAGCTGGGCTAG
Band lengths:
162-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]