MmuEX0028743 @ mm9
Exon Skipping
Gene
ENSMUSG00000020691 | Mettl2
Description
methyltransferase like 2 [Source:MGI Symbol;Acc:MGI:1289171]
Coordinates
chr11:104992887-104996758:+
Coord C1 exon
chr11:104992887-104992947
Coord A exon
chr11:104993755-104993894
Coord C2 exon
chr11:104996652-104996758
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTCGCTCCAACTCTCCACAGACA
3' ss Score
8.28
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TAACCCAAACCTCTTCGTTTACTGTTGTGACTTTTCTGCCACGGCTATTGAACTGCTCAAG
Seq A exon
ACAAATTCACAATATGATCCTTCTCGCTGTTATGCCTTTGTTCATGATCTCTGTGATGAAGATCAGAGTTACCCAGTGCCTGAGGACAGTCTTGATGTCATCGTTCTTATATTTGTTCTTTCAGCAATTGTTCCAGACAA
Seq C2 exon
GATGCAGAAAGCGATCAGCAAGCTAAGCCGACTCCTGAAGCCTGGAGGGGTGATGCTTCTTCGAGACTATGGCCGCTATGACATGGCTCAACTTCGGTTTAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020691_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(10.7=100)
A:
PF134891=Methyltransf_23=FE(24.6=100),PF110413=DUF2612=PU(65.1=87.2)
C2:
PF134891=Methyltransf_23=FE(19.3=100),PF110413=DUF2612=PD(33.3=56.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAACCTCTTCGTTTACTGT
R:
TCTTAAACCGAAGTTGAGCCATGT
Band lengths:
163-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: