GgaEX1035984 @ galGal3
Exon Skipping
Gene
ENSGALG00000000396 | METTL2A
Description
NA
Coordinates
chr27:2245897-2248808:+
Coord C1 exon
chr27:2245897-2245957
Coord A exon
chr27:2246792-2246931
Coord C2 exon
chr27:2248702-2248808
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTCTCTCCCCTTAAATACAGAGC
3' ss Score
5.93
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TGACCCAGGCCTTTTTGTTTATTGCTGTGACTTTTCTACTACAGCTGTGGATCTTGTCCAG
Seq A exon
AGCAATGTGGAATATGATTCTTCTCGCTGCTTTGCATTTGTCCATGACCTCTGCAATGACCAAAGTCCTTTCCCAATGCCAGATGAAAGCCTTGACATTGTCATTCTCATCTTTGTCCTCTCAGCGATTCTCCCAGAGAA
Seq C2 exon
GATGCAGTGTGTCATTAACAAACTGAGTCGCCTTCTGAAACCAGGAGGAATGATTTTGTTACGGGATTATGGCCGTTACGACCTAGCCCAGCTTCGGTTCAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000396-'10-8,'10-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134891=Methyltransf_23=FE(10.5=100)
A:
PF134891=Methyltransf_23=FE(24.1=100),PF118993=DUF3419=PU(28.1=57.4)
C2:
PF082427=Methyltransf_12=PD(17.5=48.6),PF118993=DUF3419=FE(38.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGGCCTTTTTGTTTATTGC
R:
CTTGAACCGAAGCTGGGCTAG
Band lengths:
162-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]