DreEX0046128 @ danRer10
Exon Skipping
Gene
ENSDARG00000008105 | mettl2a
Description
methyltransferase like 2A [Source:ZFIN;Acc:ZDB-GENE-050417-462]
Coordinates
chr3:19527003-19528661:+
Coord C1 exon
chr3:19527003-19527063
Coord A exon
chr3:19527152-19527291
Coord C2 exon
chr3:19528555-19528661
Length
140 bp
Sequences
Splice sites
3' ss Seq
ACATTTTAGTTTTTTGGCAGTCA
3' ss Score
1.93
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
TGACCCAGGACTCTTTGTTTACTGTTGTGATTTCTCCAGCACAGCTGTAGACCTCGTCAAA
Seq A exon
TCAAATCCTGAGTATGACCCATCACGCTGTCATGCATTTGTCCATGATATGAGTGATGAATCTGGAGAGTATCCCATGCCAGATCACAGTCTGGACGTCATCGTCCTCATATTTGTGCTGTCCGCTCTGCACCCTGAGAA
Seq C2 exon
GATGCAAAAGTCTATCAATAGATTGGGACGATTGCTGAAACCCGGAGGAGTGTTGTTATTGAGAGACTATGGCCGATATGACATGGCACAGCTACGTTTCAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008105-'6-9,'6-8,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF082427=Methyltransf_12=FE(19.2=100)
A:
PF082427=Methyltransf_12=FE(44.2=100),PF118993=DUF3419=PU(37.5=70.2)
C2:
PF082427=Methyltransf_12=PD(17.3=48.6),PF118993=DUF3419=FE(40.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCAGGACTCTTTGTTTACTG
R:
TGAAACGTAGCTGTGCCATGT
Band lengths:
162-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]