BtaEX6089482 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48398315-48403092:+
Coord C1 exon
chr19:48398315-48398406
Coord A exon
chr19:48400254-48400400
Coord C2 exon
chr19:48402992-48403092
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTGTGCTCCCACTAGAAA
3' ss Score
8.3
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq A exon
AAAGGTAAAGTAAAGGAAGCCGCCCAGCGCTACCAGTATGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTGAAGGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq C2 exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(22.4=30.6)
C2:
PF134141=TPR_11=FE(49.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCACCTCCAAACC
R:
CTGCTGCTGCGTTTGGCC
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]