GgaEX1000101 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2538890-2543146:+
Coord C1 exon
chr27:2538890-2538981
Coord A exon
chr27:2540520-2540666
Coord C2 exon
chr27:2543046-2543146
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACACGTTCTCCTTCTATCAGAAA
3' ss Score
8.46
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
Seq A exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
Seq C2 exon
GACTTTGGGATGGCGGAGGAATTCGCTACTAAAGCACTGGAGCTGAAACCGAAATCCTACGAAGCTTACTATGCAAGAGCAAGGGCCAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'23-22,'23-21,24-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(22.4=30.6)
C2:
PF134141=TPR_11=FE(49.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGCAACATGGGCGATG
R:
CTGCGTTTGGCCCTTGCTC
Band lengths:
187-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]