RnoEX6050077 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94118986-94123506:+
Coord C1 exon
chr10:94118986-94119077
Coord A exon
chr10:94120700-94120846
Coord C2 exon
chr10:94123406-94123506
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTTATTTGTACCCCCTTAGAAA
3' ss Score
6.94
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq A exon
AAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
Seq C2 exon
GATTTTGGAATGGCGGAGGAATTTGCTACTAAGGCCCTGGAGCTGAAACCGAAATCTTATGAAGCATACTATGCGAGAGCAAGGGCAAAACGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'47-52,'47-51,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF134141=TPR_11=PU(20.0=26.5)
C2:
PF134141=TPR_11=FE(50.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGGCCACCTCCAAACC
R:
CTGCTGCTGCGTTTTGCC
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]