DreEX0077234 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22672225-22677783:+
Coord C1 exon
chr3:22672225-22672316
Coord A exon
chr3:22674445-22674591
Coord C2 exon
chr3:22677683-22677783
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAATTGTGTTGCTGACACAGAAA
3' ss Score
3.44
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GTCCTGCAACATGGGCAATGGCCACATCCAAACCTGATATTATGATTGTTCTGCTCAGCAAACTCATAGAGGAAGGAGATGGATTCTACAAG
Seq A exon
AAAGGAAAGGTGAAAGAAGCTGCTCAGAGGTACCAGTACGCCCTGAAGAAGTTTCCTCGAGAAGGTTTCACCGAGGATCTGAAGACCTTCCGTGAGCTCAAAGTGTCCCTGCTGCTCAACCTGTCCCGCTGCCGGAGGAAAATGAAC
Seq C2 exon
GACTTTGGGATGGCGGAGGAGTTTGCCTCCAAGGCACTAGAGTTGAAACCCAAATCCTATGAAGCCTATTACGCACGAGCCCGTGCCAAGCGCAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'40-41,'40-40,41-41
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(15.2=38.7)
A:
PF134141=TPR_11=PU(23.5=32.7)
C2:
PF134141=TPR_11=PD(20.3=47.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCAACATGGGCAATGG
R:
GCTCGTGCGTAATAGGCTTCA
Band lengths:
171-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]