BtaEX6089483 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48396784-48400400:+
Coord C1 exon
chr19:48396784-48396916
Coord A exon
chr19:48398315-48398406
Coord C2 exon
chr19:48400254-48400400
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCACGGGGCCATGATCGAGCACGTGGACTACAGTGGAATGCGCCCTCTGGACAGGGCTGTGGGGTGCCGGAACACTTCTGTTGTTGTCACCCTTCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq C2 exon
AAAGGTAAAGTAAAGGAAGCCGCCCAGCGCTACCAGTATGCCCTGAAGAAGTTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTGAAGGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'26-29,'26-28,28-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
PF134141=TPR_11=PU(22.4=30.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGAACACTTCTGTTGTT
R:
GGAGGAGAGACACCTTCAGCT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]