RnoEX0088548 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94117459-94120846:+
Coord C1 exon
chr10:94117459-94117591
Coord A exon
chr10:94118986-94119077
Coord C2 exon
chr10:94120700-94120846
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATCGGGCAGTGGGTTGCAGGAACACGTCTGTTGTAGTAACTCTACTGAAGAAAGGAGCCAAAATAG
Seq A exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq C2 exon
AAAGGTAAAGTAAAGGAAGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACTTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'44-51,'44-50,47-51
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
PF134141=TPR_11=PU(20.0=26.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCTGGTGGATCATGGGG
R:
TCAGAGCATACTGGTAGCGCT
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]