GgaEX6027270 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2537412-2540666:+
Coord C1 exon
chr27:2537412-2537544
Coord A exon
chr27:2538890-2538981
Coord C2 exon
chr27:2540520-2540666
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCATCCTGTACACTGCAGGTC
3' ss Score
6.76
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTTCAGTTCCTGGTGGACCACGGGGCCATGATTGAGCACGTCGACTACAGCGGGATGCGTCCCCTGGACAGGGCGGTGGGGTGCCGCAACACCTCGGTGGTCGTCACCCTCCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
Seq C2 exon
AAAGGTAAAGTGAAGGAGGCTGCCCAGCGCTACCAGTACGCCCTGAAGAAGTTCCCCAGGGAAGGCTTTGGGGAAGACCTGAAAACCTTCCGTGAGCTGAAGGTGTCACTCCTTCTCAACCTCTCCCGATGTCGAAGGAAAATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'21-21,'21-20,23-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
PF134141=TPR_11=PU(22.4=30.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATTGAGCACGTCGACT
R:
TCCCTGGGGAACTTCTTCAGG
Band lengths:
170-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]