MmuEX6090445 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105774671-105778374:+
Coord C1 exon
chr11:105774671-105774803
Coord A exon
chr11:105776206-105776297
Coord C2 exon
chr11:105778228-105778374
Length
92 bp
Sequences
Splice sites
3' ss Seq
ATGCATCCTGTACACTACAGGTC
3' ss Score
6.21
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTAGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATAGGGCAGTGGGTTGCCGGAACACGTCTGTTGTAGTAACTCTACTGAAAAAAGGAGCCAAAATAG
Seq A exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
Seq C2 exon
AAAGGGAAAGTAAAGGAGGCTGCCCAGCGCTACCAGTATGCTCTGAAGAAATTCCCTAGAGAAGGGTTTGGTGAGGACCTGAAAACCTTCCGGGAGCTAAAAGTGTCTCTCCTCCTCAACCTCTCTCGATGTCGCAGGAAAATGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'27-32,'27-31,29-32=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.032 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
PF134141=TPR_11=PU(18.8=37.5)
C2:
PF134141=TPR_11=PU(20.0=26.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTGGTAGATCATGGGGCC
R:
TCAGAGCATACTGGTAGCGCT
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: