RnoEX0088552 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94117459-94119077:+
Coord C1 exon
chr10:94117459-94117591
Coord A exon
chr10:94118142-94118171
Coord C2 exon
chr10:94118986-94119077
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCCTTTCTTTGAAGGTT
3' ss Score
10.72
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATCGGGCAGTGGGTTGCAGGAACACGTCTGTTGTAGTAACTCTACTGAAGAAAGGAGCCAAAATAG
Seq A exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGGAACACGTCTGTTGT
R:
CCATCAGCTTGCTCAACAGGA
Band lengths:
122-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]