DreEX0077233 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22666249-22672316:+
Coord C1 exon
chr3:22666249-22666381
Coord A exon
chr3:22668923-22668952
Coord C2 exon
chr3:22672225-22672316
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTGACCCCTGTCGTAACCAGGAT
3' ss Score
7.68
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTGCAGTTTCTGGTGGATCACGGTGCGATGATTGAGCATGTGGATTACAGCGGCATGCGTCCACTGGATCGAGCGGTTGGATGCAGGAACACGTCAGTGGTGGTGGCACTGCTCAAGAAGGGTGCAAAAATAG
Seq A exon
GATGTCAGACACTCCCTACTCGTGCCCGAG
Seq C2 exon
GTCCTGCAACATGGGCAATGGCCACATCCAAACCTGATATTATGATTGTTCTGCTCAGCAAACTCATAGAGGAAGGAGATGGATTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'38-38,'38-37,39-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(62.0=100)
A:
PF127962=Ank_2=PD(4.2=27.3)
C2:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(15.2=38.7)
Main Inclusion Isoform:
ENSDART00000112270fB6468
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCATGTGGATTACAGCGG
R:
CCATTGCCCATGTTGCAGGA
Band lengths:
122-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]