GgaEX0000407 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2537412-2538981:+
Coord C1 exon
chr27:2537412-2537544
Coord A exon
chr27:2538066-2538095
Coord C2 exon
chr27:2538890-2538981
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCCTTTCTTTGAAGGTT
3' ss Score
10.72
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTTCAGTTCCTGGTGGACCACGGGGCCATGATTGAGCACGTCGACTACAGCGGGATGCGTCCCCTGGACAGGGCGGTGGGGTGCCGCAACACCTCGGTGGTCGTCACCCTCCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
Seq C2 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'21-20,'21-19,22-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTCACCCTCCTGAAGAA
R:
GTCTCCCTCCTCCATCAGCTT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event