GgaEX0000407 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2620060-2621629:+
Coord C1 exon
chr27:2620060-2620192
Coord A exon
chr27:2620714-2620743
Coord C2 exon
chr27:2621538-2621629
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCCTTTCTTTGAAGGTT
3' ss Score
10.72
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTTCAGTTCCTGGTGGACCACGGGGCCATGATTGAGCACGTCGACTACAGCGGGATGCGTCCCCTGGACAGGGCGGTGGGGTGCCGCAACACCTCGGTGGTCGTCACCCTCCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
Seq C2 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000000648fB40
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCGTCACCCTCCTGAAGAA
R:
GTCTCCCTCCTCCATCAGCTT
Band lengths:
115-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]