GgaEX0000406 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2615980-2621629:+
Coord C1 exon
chr27:2615980-2616103
Coord A exon
chr27:2620060-2620192
Coord C2 exon
chr27:2621538-2621629
Length
133 bp
Sequences
Splice sites
3' ss Seq
CGGCTGGTTTGCCATTGCAGGTT
3' ss Score
7.51
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
Exon sequences
Seq C1 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
Seq A exon
GTTCAGTTCCTGGTGGACCACGGGGCCATGATTGAGCACGTCGACTACAGCGGGATGCGTCCCCTGGACAGGGCGGTGGGGTGCCGCAACACCTCGGTGGTCGTCACCCTCCTGAAGAAAGGAGCCAAGATAG
Seq C2 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGACCTGCTGCTCAC
R:
AAACATGTCTCCCTCCTCCATCA
Band lengths:
210-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]