MmuEX6090446 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105912912-105914983:+
Coord C1 exon
chr11:105912912-105913087
Coord A exon
chr11:105913357-105913489
Coord C2 exon
chr11:105914892-105914983
Length
133 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTGTTCCTTTCCTAGGTC
3' ss Score
11.24
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGCCTCCATTGCCCTGATGGACAAAGAAGGACTAACAGCCCTTAGCTGGGCTTGTCTGAAGGGCCATCTCTCAGTAGTACGCTCTCTGGTGGATAACGGGGCTGCTACAGACCATGCAGACAAGAATGGCCGTACCCCACTGGACCTAGCAGCTTTCTACGGTGATGCTGAGGTG
Seq A exon
GTCCAGTTCCTGGTAGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATAGGGCAGTGGGTTGCCGGAACACGTCTGTTGTAGTAACTCTACTGAAAAAAGGAGCCAAAATAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'40-66,'40-61,43-66=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.021
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(44.1=68.3),PF0002325=Ank=PU(48.5=26.7)
A:
PF0002325=Ank=PD(48.5=35.6)
C2:
PF134141=TPR_11=PU(18.8=37.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATTGCCCTGATGGACAA
R:
CCCTCTTCCATCAGCTTGCTC
Band lengths:
248-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types