BtaEX6089484 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48396119-48398406:+
Coord C1 exon
chr19:48396119-48396294
Coord A exon
chr19:48396784-48396916
Coord C2 exon
chr19:48398315-48398406
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTGATCATGTCCTAGGTC
3' ss Score
5.2
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
GTGCCTCCATCGCTCTCATGGACAAAGAAGGACTGACCGCTCTCAGCTGGGCTTGTCTGAAGGGTCATCTCTCGGTGGTCCGTTCTCTGGTGGATAACGGGGCTGCCACCGACCACGCCGATAAGAACGGCCGCACCCCGCTGGATCTAGCCGCTTTCTACGGCGACGCTGAGGTG
Seq A exon
GTCCAGTTCCTGGTGGATCACGGGGCCATGATCGAGCACGTGGACTACAGTGGAATGCGCCCTCTGGACAGGGCTGTGGGGTGCCGGAACACTTCTGTTGTTGTCACCCTTCTGAAGAAAGGAGCCAAGATAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'25-28,'25-26,26-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATCGCTCTCATGGACA
R:
CCCTCTTCCATCAGCTTGCTC
Band lengths:
249-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]