DreEX6016280 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22665982-22672316:+
Coord C1 exon
chr3:22665982-22666157
Coord A exon
chr3:22666249-22666381
Coord C2 exon
chr3:22672225-22672316
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTAATATGGTTCCAGGTG
3' ss Score
7.09
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
GTGCGTCATTGTCTCTAATGGACAAAGAGGGTCTGACAGCGCTGAGCTGGGCCTGTCTTAAAGGACACCTCCCGTTGGTTCGTGCTCTGGTGGAGAGAGGTGCAGCAACAGCCCATGCAGACAAGAGCGGCCGCACTCCACTGGATCTTGCTGCATTTTACGGAGACTCTGAAGTG
Seq A exon
GTGCAGTTTCTGGTGGATCACGGTGCGATGATTGAGCATGTGGATTACAGCGGCATGCGTCCACTGGATCGAGCGGTTGGATGCAGGAACACGTCAGTGGTGGTGGCACTGCTCAAGAAGGGTGCAAAAATAG
Seq C2 exon
GTCCTGCAACATGGGCAATGGCCACATCCAAACCTGATATTATGATTGTTCTGCTCAGCAAACTCATAGAGGAAGGAGATGGATTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'37-38,'37-36,38-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF127962=Ank_2=PU(32.4=39.0)
A:
PF127962=Ank_2=FE(62.0=100)
C2:
PF127962=Ank_2=PD(2.8=6.5),PF134141=TPR_11=PU(15.2=38.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGAGGGTCTGACAGCG
R:
TGTAGAATCCATCTCCTTCCTCT
Band lengths:
246-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]