RnoEX6050078 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94116977-94118171:+
Coord C1 exon
chr10:94116977-94117152
Coord A exon
chr10:94117459-94117591
Coord C2 exon
chr10:94118142-94118171
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTGTTCCTTTCCTAGGTC
3' ss Score
11.5
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GTGCCTCCATTGCCCTGATGGACAAAGAAGGGTTGACAGCCCTCAGCTGGGCTTGTCTGAAGGGCCATCTCTCAGTAGTACGCTCTCTAGTGGATAATGGAGCTGCTACAGACCATGCAGACAAGAATGGCCGCACCCCACTGGACCTGGCAGCTTTCTATGGTGATGCTGAGGTG
Seq A exon
GTCCAGTTCCTGGTGGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATCGGGCAGTGGGTTGCAGGAACACGTCTGTTGTAGTAACTCTACTGAAGAAAGGAGCCAAAATAG
Seq C2 exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'43-49,'43-48,44-49=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
A:
PF0002325=Ank=PD(45.5=33.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATTGCCCTGATGGACAA
R:
CTCGTGGGCGACTCGGTAA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]