GgaEX0000405 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2615980-2620743:+
Coord C1 exon
chr27:2615980-2616103
Coord A exon
chr27:2619245-2619420
Coord C2 exon
chr27:2620714-2620743
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCTGCCACTTGTCCTTCCAGGTG
3' ss Score
10.53
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
Seq A exon
GTGCCTCCATTTCTCTGATGGACAAGGAGGGTTTGACAGCCCTCAGCTGGGCTTGCCTGAAAGGCCACCTGGCCGTGGTGCGGGCCCTGGTGGAGAACGGGGCGGCCACCGACCACGCCGACAAAAATGGGCGCACACCACTGGACCTGGCGGCTTTCTATGGCGACGCGGAGGTG
Seq C2 exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_MULTIEX1-1/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSGALT00000000648fB40
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGACCTGCTGCTCAC
R:
CTCGTGGGCGACTCGGTAA
Band lengths:
154-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]