GgaEX0000405 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2533332-2538981:+
Coord C1 exon
chr27:2533332-2533455
Coord A exon
chr27:2536597-2536772
Coord C2 exon
chr27:2538890-2538981
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCTGCCACTTGTCCTTCCAGGTG
3' ss Score
10.53
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
ATTGTGGACCTGCTGCTCACCCACGGCGCCGACGTGAACATGGCAGACAAGCAGGGCCGGACACCACTGATGATGGCTGCGTCGGAGGGACACCTGGGCACGGTGGAGTTTCTGCTTGCACAAG
Seq A exon
GTGCCTCCATTTCTCTGATGGACAAGGAGGGTTTGACAGCCCTCAGCTGGGCTTGCCTGAAAGGCCACCTGGCCGTGGTGCGGGCCCTGGTGGAGAACGGGGCGGCCACCGACCACGCCGACAAAAATGGGCGCACACCACTGGACCTGGCGGCTTTCTATGGCGACGCGGAGGTG
Seq C2 exon
GTCCAGCAACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGTTGAGCAAGCTGATGGAGGAGGGAGACATGTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.085 C2=0.032
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGGACCTGCTGCTCAC
R:
AAACATGTCTCCCTCCTCCATCA
Band lengths:
210-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]