RnoEX0088547 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94114379-94117591:+
Coord C1 exon
chr10:94114379-94114502
Coord A exon
chr10:94116977-94117152
Coord C2 exon
chr10:94117459-94117591
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACAGGTTTCTCTTCTTTTAGGTG
3' ss Score
9.78
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATTGTTGACCTTTTACTGACCCATGGAGCAGATGTCAACATGGCAGACAAGCAGGGTCGTACTCCCCTGATGATGGCTGCTTCTGAAGGCCATCTAGGAACTGTGGACTTCCTTCTTGCACAAG
Seq A exon
GTGCCTCCATTGCCCTGATGGACAAAGAAGGGTTGACAGCCCTCAGCTGGGCTTGTCTGAAGGGCCATCTCTCAGTAGTACGCTCTCTAGTGGATAATGGAGCTGCTACAGACCATGCAGACAAGAATGGCCGCACCCCACTGGACCTGGCAGCTTTCTATGGTGATGCTGAGGTG
Seq C2 exon
GTCCAGTTCCTGGTGGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATCGGGCAGTGGGTTGCAGGAACACGTCTGTTGTAGTAACTCTACTGAAGAAAGGAGCCAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'42-48,'42-47,43-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.085 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTTTTACTGACCCATGGAGC
R:
TGGCTCCTTTCTTCAGTAGAGT
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]