DreEX6016281 @ danRer10
Exon Skipping
Gene
ENSDARG00000079097 | tanc2a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2a [Source:ZFIN;Acc:ZDB-GENE-060130-180]
Coordinates
chr3:22664125-22666381:+
Coord C1 exon
chr3:22664125-22664248
Coord A exon
chr3:22665982-22666157
Coord C2 exon
chr3:22666249-22666381
Length
176 bp
Sequences
Splice sites
3' ss Seq
CTTTGCAACTTCTTCCTCAGGTG
3' ss Score
9.5
5' ss Seq
GTGGTTGGT
5' ss Score
2.44
Exon sequences
Seq C1 exon
ATAGTGGACCTGCTGCTAAATCATGGCGCTGATGTCAACATGGCTGATAAACAAGGGCGAACACCTCTAATGATGGCTGCTTCTGAAGGACATTTGGGTACTGCAGAGTTCCTGCTGGCTCAAG
Seq A exon
GTGCGTCATTGTCTCTAATGGACAAAGAGGGTCTGACAGCGCTGAGCTGGGCCTGTCTTAAAGGACACCTCCCGTTGGTTCGTGCTCTGGTGGAGAGAGGTGCAGCAACAGCCCATGCAGACAAGAGCGGCCGCACTCCACTGGATCTTGCTGCATTTTACGGAGACTCTGAAGTG
Seq C2 exon
GTGCAGTTTCTGGTGGATCACGGTGCGATGATTGAGCATGTGGATTACAGCGGCATGCGTCCACTGGATCGAGCGGTTGGATGCAGGAACACGTCAGTGGTGGTGGCACTGCTCAAGAAGGGTGCAAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079097-'35-36,'35-35,37-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF127962=Ank_2=PU(32.4=39.0)
C2:
PF127962=Ank_2=FE(62.0=100)
Main Skipping Isoform:
ENSDART00000112270fB6470
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGCTGCTAAATCATGGCG
R:
TTGCACCCTTCTTGAGCAGTG
Band lengths:
244-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]