MmuEX6090447 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105771517-105774803:+
Coord C1 exon
chr11:105771517-105771640
Coord A exon
chr11:105774226-105774401
Coord C2 exon
chr11:105774671-105774803
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACTCTCACTCTTTTTTTCAGGTG
3' ss Score
11
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
ATTGTTGATCTTTTACTGACCCATGGAGCTGATGTCAACATGGCAGACAAGCAGGGTCGTACTCCCCTGATGATGGCTGCTTCTGAAGGCCATCTAGGAACCGTGGACTTCCTACTAGCACAAG
Seq A exon
GTGCCTCCATTGCCCTGATGGACAAAGAAGGACTAACAGCCCTTAGCTGGGCTTGTCTGAAGGGCCATCTCTCAGTAGTACGCTCTCTGGTGGATAACGGGGCTGCTACAGACCATGCAGACAAGAATGGCCGTACCCCACTGGACCTAGCAGCTTTCTACGGTGATGCTGAGGTG
Seq C2 exon
GTCCAGTTCCTGGTAGATCATGGGGCCATGATTGAGCATGTTGACTACAGTGGAATGCGTCCTTTGGATAGGGCAGTGGGTTGCCGGAACACGTCTGTTGTAGTAACTCTACTGAAAAAAGGAGCCAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.084 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(44.1=100)
A:
PF127962=Ank_2=PD(43.0=67.8),PF0002325=Ank=PU(48.5=27.1)
C2:
PF0002325=Ank=PD(45.5=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTTGATCTTTTACTGACCCATGG
R:
AGAGTTACTACAACAGACGTGTTCC
Band lengths:
234-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: