BtaEX0035579 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48396784-48398406:+
Coord C1 exon
chr19:48396784-48396916
Coord A exon
chr19:48397464-48397493
Coord C2 exon
chr19:48398315-48398406
Length
30 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCCTTTCTTTGAAGGTT
3' ss Score
10.72
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
GTCCAGTTCCTGGTGGATCACGGGGCCATGATCGAGCACGTGGACTACAGTGGAATGCGCCCTCTGGACAGGGCTGTGGGGTGCCGGAACACTTCTGTTGTTGTCACCCTTCTGAAGAAAGGAGCCAAGATAG
Seq A exon
GTTGTCAGACGTTACCGAGTCGCCCACGAG
Seq C2 exon
GTCCAGCCACATGGGCGATGGCCACCTCCAAACCAGACATCATGATCATCCTGCTGAGCAAGCTGATGGAAGAGGGGGACATGTTTTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(45.5=33.3)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000005565fB6922
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCGGAACACTTCTGTTGTT
R:
CCCTCTTCCATCAGCTTGCTC
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development