BtaEX6089489 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004249 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr19:48376047-48382026:+
Coord C1 exon
chr19:48376047-48376283
Coord A exon
chr19:48379570-48379755
Coord C2 exon
chr19:48381933-48382026
Length
186 bp
Sequences
Splice sites
3' ss Seq
TTCTCTGTCCCCTCCCGCAGGTG
3' ss Score
14.15
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCAGCCGACTGCTGATTTTGGGAGGTGCCAACATTAATTACCGGACAGAAGTTTTGAATAATGCTCCAATTCTGTGTGTCCAGTCTCATCTTGGTTACACAGAAATGGTGGCCCTGCTCTTGGAGTTTGGGGCCAACGTGGATGCCTCCTCTGAAAGTGGCCTGACTCCCCTGGGCTATGCCGCGGCGGCAGGCTTCCTGAGCATCGTAGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq A exon
GTGGATCACTTAGATAAGAATGGGCAGTGCGCCCTGGTCCATGCCGCACTCCGAGGTCATCTGGAGGTCGTCAAGTTTCTCATTCAGTGTGACTGGACGATGGCGGGCCAGCAGCAGGGGGTGTTTAAGAAGAGCCACGCCATCCAGCAAGCCCTCATCGCTGCAGCCAGCATGGGTTACACTGAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAGGTGGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004249-'19-20,'19-19,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(61.4=68.4)
A:
PF127962=Ank_2=PD(36.4=51.6),PF136371=Ank_4=PU(20.6=21.0)
C2:
PF136371=Ank_4=FE(49.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAATTCTGTGTGTCCA
R:
CTGTTGATCTGTGCTCGCTCC
Band lengths:
243-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]