GgaEX1000100 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr27:2607999-2611155:+
Coord C1 exon
chr27:2607999-2608235
Coord A exon
chr27:2610181-2610366
Coord C2 exon
chr27:2611062-2611155
Length
186 bp
Sequences
Splice sites
3' ss Seq
TGTCACCTTCTCTTTTCAAGGTG
3' ss Score
11.06
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq A exon
GTGGATCACTTGGATAAGAACGGTCAGTGCGCGTTGGTCCACGCCGCCCTCCGAGGACACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGAGCATGGCTGGGCAGCAGCAGGGGGTGTTCAAAAAGAGCCACGCCATCCAGCAGGCCCTGATCGCTGCAGCCAGCATGGGCTACACGGAG
Seq C2 exon
ATTGTCTCCTACCTGCTCGACCTTCCAGAAAAAGATGAGGAGGAGGTGGAGCGAGCTCAGATCAACAGCTTTGACAGCCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'26-17,'26-16,27-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAACAACGCCCCGATTC
R:
AAGCTGTTGATCTGAGCTCGC
Band lengths:
256-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]