MmuEX6090451 @ mm10
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105896468-105902153:+
Coord C1 exon
chr11:105896468-105896704
Coord A exon
chr11:105899684-105899869
Coord C2 exon
chr11:105902060-105902153
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTCTATTTTCTTCCCATAGGTG
3' ss Score
12.79
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCAGCAGACTGCTGATTCTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCTATCCTATGTGTCCAGTCTCACCTTGGATACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCTAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCCCTGGGGTATGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
Seq A exon
GTGGATCACTTGGATAAGAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCATCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCACGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'29-64,'29-53,36-64=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(58.5=69.6)
A:
PF127962=Ank_2=PD(39.4=59.7),PF136371=Ank_4=PU(20.6=21.0)
C2:
PF127962=Ank_2=FE(28.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTCCAGTCTCACCTTGGA
R:
CCCCAGAGACTGTCAAAACTGT
Band lengths:
248-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types