RnoEX6050080 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94093953-94105118:+
Coord C1 exon
chr10:94093953-94094189
Coord A exon
chr10:94102879-94103064
Coord C2 exon
chr10:94105025-94105118
Length
186 bp
Sequences
Splice sites
3' ss Seq
TCTCTATTCTCTTCCCATAGGTA
3' ss Score
12.36
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTCAGCAGACTGCTGATTCTGGGAGGAGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCCATCCTATGTGTCCAGTCTCACCTTGGCTACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCCAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCTCTGGGATACGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
Seq A exon
GTAGATCACTTGGATAAAAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCACCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCAAGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
Seq C2 exon
ATTGTCTCCTACCTACTTGATCTTCCAGAAAAAGATGAAGAGGAAGTGGAGCGAGCACAAATCAACAGTTTTGACAGTCTTTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'38-42,'38-39,39-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(58.1=68.4)
A:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
C2:
PF136371=Ank_4=FE(49.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCCATCCTATGTGTCCA
R:
TGTTGATTTGTGCTCGCTCCA
Band lengths:
242-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]