RnoEX6050081 @ rn6
Exon Skipping
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:94093314-94103064:+
Coord C1 exon
chr10:94093314-94093436
Coord A exon
chr10:94093953-94094189
Coord C2 exon
chr10:94102879-94103064
Length
237 bp
Sequences
Splice sites
3' ss Seq
AGTCTGGTATTTGTTTCTAGGTC
3' ss Score
7.76
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAGGTTGGTGTATCGTCCTCCATCCTCCAAGGACTCTGGATCTCCTATAGCACAGAAGGTCTTTCCATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAG
Seq A exon
GTCAGCAGACTGCTGATTCTGGGAGGAGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCCATCCTATGTGTCCAGTCTCACCTTGGCTACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCCAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCTCTGGGATACGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
Seq C2 exon
GTAGATCACTTGGATAAAAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCACCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCAAGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-'37-39,'37-37,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(58.1=68.4)
C2:
PF127962=Ank_2=PD(39.8=59.7),PF136371=Ank_4=PU(20.6=21.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGTGTATCGTCCTCCA
R:
CTCAGTGTAACCCATGCTGGC
Band lengths:
296-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]