MmuEX6090452 @ mm9
Exon Skipping
Gene
ENSMUSG00000053580 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:MGI Symbol;Acc:MGI:2444121]
Coordinates
chr11:105757160-105761183:+
Coord C1 exon
chr11:105757160-105757282
Coord A exon
chr11:105757782-105758018
Coord C2 exon
chr11:105760998-105761183
Length
237 bp
Sequences
Splice sites
3' ss Seq
TGTCTGGTGTTTGTTTCTAGGTC
3' ss Score
11.02
5' ss Seq
AAGGTAGCC
5' ss Score
7.58
Exon sequences
Seq C1 exon
GGTTTGAGTAAAAAGGTTGGTGTATCGTCCTCCATCCTCCAAGGCCTCTGGATCTCCTACAGCACAGAAGGTCTTTCCATGGCATTGGCCTCTTTACGAAATCTCTACACTCCAAATATAAAG
Seq A exon
GTCAGCAGACTGCTGATTCTGGGAGGTGCCAATATTAATTACCGGACAGAGGTTCTAAATAATGCTCCTATCCTATGTGTCCAGTCTCACCTTGGATACACAGAAATGGTGGCCCTGCTTTTGGAGTTTGGGGCTAATGTGGATGCCTCTTCTGAGAGTGGCCTGACTCCCCTGGGGTATGCTGCAGCAGCAGGGTTCCTGAGCATCGTGGTGTTGCTGTGCAAGAAACGGGCCAAG
Seq C2 exon
GTGGATCACTTGGATAAGAATGGACAGTGTGCTTTGGTTCATGCTGCTCTGCGAGGTCATCTAGAGGTTGTCAAGTTTCTGATTCAGTGTGACTGGACAATGGCTGGCCAGCAGCAAGGAGTGTTTAAGAAGAGCCACGCCATCCAGCAGGCCCTCATTGCTGCAGCCAGCATGGGTTACACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053580-'20-22,'20-20,21-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(58.7=68.4)
C2:
PF127962=Ank_2=PD(39.1=58.1),PF136371=Ank_4=PU(20.6=21.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTGGTGTATCGTCCTCCA
R:
CTCAGTGTAACCCATGCTGGC
Band lengths:
296-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: