GgaEX6027273 @ galGal3
Exon Skipping
Gene
ENSGALG00000000478 | TANC2
Description
NA
Coordinates
chr27:2525013-2527718:+
Coord C1 exon
chr27:2525013-2525135
Coord A exon
chr27:2525351-2525587
Coord C2 exon
chr27:2527533-2527718
Length
237 bp
Sequences
Splice sites
3' ss Seq
GCTTCCCTTCTGCTCTGCAGGTC
3' ss Score
9.57
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
GGGCTGAGTAAAAAAGTTGGGGTGTCTTCCTCCATCCTGCAAGGGCTTTGGATCTCCTACAGCACTGAGGGTCTTTCCATGGCTTTGGCATCGCTGAGAAACCTCTACACCCCAAACATCAAG
Seq A exon
GTCAGTCGGCTGCTGATTTTAGGAGGTGCCAACGTGAATTACCGGACCGAAGTTCTGAACAACGCCCCGATTCTGTGCGTGCAGTCCCACCTGGGTTACACAGAGATGGTGGCTTTGCTCCTGGAGTTCGGTGCCAACGTAGATGCTGCTTCTGAGAGCGGCCTCACCCCCCTTGGGTACGCTGCTGCTGCTGGGTTCCTGAGCATCGTTGTGCTGCTGTGCAAGAAACGGGCCAAG
Seq C2 exon
GTGGATCACTTGGATAAGAACGGTCAGTGCGCGTTGGTCCACGCCGCCCTCCGAGGACACCTGGAAGTGGTGAAGTTCCTGATCCAGTGTGACTGGAGCATGGCTGGGCAGCAGCAGGGGGTGTTCAAAAAGAGCCACGCCATCCAGCAGGCCCTGATCGCTGCAGCCAGCATGGGCTACACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000478-'14-12,'14-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF127962=Ank_2=PU(57.9=69.6)
C2:
PF127962=Ank_2=PD(40.0=61.3),PF136371=Ank_4=PU(19.4=19.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTTGGGGTGTCTTCCTCC
R:
GCTGGCTGCAGCGATCAG
Band lengths:
284-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]